Reproducibility

Data Organization in Spreadsheets for Ecologists

Good data organization is the foundation of any research project. Most researchers have data in spreadsheets, so it’s the place that many research projects start. We organize data in spreadsheets in the ways that we as humans want to work with the …

Data Organization in Spreadsheets for Social Scientists

Lesson on spreadsheets for social scientists. Good data organization is the foundation of any research project. Most researchers have data in spreadsheets, so it’s the place that many research projects start. Typically we organize data in …

Data sharing in PLOS ONE: An analysis of Data Availability Statements

A number of publishers and funders, including PLOS, have recently adopted policies requiring researchers to share the data underlying their results and publications. Such policies help increase the reproducibility of the published literature, as well …

Data Wrangling and Processing for Genomics

Data Carpentry lesson to learn how to use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation. A lot of genomics analysis is done using command-line tools for three …

Databases and SQL

Software Carpentry lesson that teaches how to use databases and SQL In the late 1920s and early 1930s, William Dyer, Frank Pabodie, and Valentina Roerich led expeditions to the Pole of Inaccessibility in the South Pacific, and then onward to …

Discrepancies in the Registries of Diet vs Drug Trials

This cross-sectional study examines discrepancies between registered protocols and subsequent publications for drug and diet trials whose findings were published in prominent clinical journals in the last decade. ClinicalTrials.gov was established in …

Economics Lesson with Stata

A Data Carpentry curriculum for Economics is being developed by Dr. Miklos Koren at Central European University. These materials are being piloted locally. Development for these lessons has been supported by a grant from the Sloan Foundation.

Effect of Population Heterogenization on the Reproducibility of Mouse Behavior: A Multi-Laboratory Study

In animal experiments, animals, husbandry and test procedures are traditionally standardized to maximize test sensitivity and minimize animal use, assuming that this will also guarantee reproducibility. However, by reducing within-experiment …

El Control de Versiones con Git

Software Carpentry lección para control de versiones con Git Para ilustrar el poder de Git y GitHub, usaremos la siguiente historia como un ejemplo motivador a través de esta lección. El Hombre Lobo y Drácula han sido contratados por Universal …

Enhancing Reproducibility through Rigor and Transparency

The information provided on this website is designed to assist the extramural community in addressing rigor and transparency in NIH grant applications and progress reports. Scientific rigor and transparency in conducting biomedical research is key to …